3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
9GHF|1|A|U|244, 9GHF|1|A|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHF_013 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.1174
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

9GHF|1|A|G|242
9GHF|1|A|A|243
9GHF|1|A|U|244
9GHF|1|A|U|245
9GHF|1|A|A|246
9GHF|1|A|G|247
*
9GHF|1|A|C|277
9GHF|1|A|G|278
9GHF|1|A|A|279
9GHF|1|A|C|280
9GHF|1|A|G|281
9GHF|1|A|A|282
9GHF|1|A|U|283
9GHF|1|A|C|284

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain Q
30S ribosomal protein S17

Coloring options:


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