3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAG*CAGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHF_021 not in the Motif Atlas
Geometric match to IL_5J7L_021
Geometric discrepancy: 0.0841
The information below is about IL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_33323.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

9GHF|1|A|C|440
9GHF|1|A|A|441
9GHF|1|A|G|442
*
9GHF|1|A|C|492
9GHF|1|A|A|493
9GHF|1|A|G|494
9GHF|1|A|A|495
9GHF|1|A|A|496
9GHF|1|A|G|497

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4

Coloring options:


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