IL_9GHF_050

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9GHF|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_050 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1138

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

9GHF|1|A|G|1124
9GHF|1|A|U|1125
9GHF|1|A|U|1126
9GHF|1|A|G|1127
9GHF|1|A|C|1128
*
9GHF|1|A|G|1144
9GHF|1|A|A|1145
9GHF|1|A|A|1146
9GHF|1|A|C|1147
9GHF|1|A|U|1148
9GHF|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10