IL_9GHF_086

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9GHF|1|a|G|776, 9GHF|1|a|A|788, 9GHF|1|a|A|789, 9GHF|1|a|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_086 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0892

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9GHF|1|a|G|775
9GHF|1|a|G|776
9GHF|1|a|G|777
*
9GHF|1|a|C|787
9GHF|1|a|A|788
9GHF|1|a|A|789
9GHF|1|a|U|790
9GHF|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain r

50S ribosomal protein L22