IL_9GHF_108

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9GHF|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_108 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0658

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9GHF|1|a|C|1208
9GHF|1|a|U|1209
9GHF|1|a|G|1210
9GHF|1|a|C|1211
9GHF|1|a|G|1212
9GHF|1|a|A|1213
9GHF|1|a|A|1214
9GHF|1|a|G|1215
*
9GHF|1|a|U|1234
9GHF|1|a|G|1235
9GHF|1|a|G|1236
9GHF|1|a|A|1237
9GHF|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20