IL_9GHF_117

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9GHF|1|a|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_117 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0545

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9GHF|1|a|C|1437
9GHF|1|a|U|1438
9GHF|1|a|A|1439
9GHF|1|a|U|1440
*
9GHF|1|a|A|1551
9GHF|1|a|A|1552
9GHF|1|a|A|1553
9GHF|1|a|U|1554
9GHF|1|a|G|1555

Current chains

Chain a

23S rRNA

Nearby chains