IL_9GHF_120

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_120 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.104

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9GHF|1|a|U|1474
9GHF|1|a|G|1475
9GHF|1|a|U|1476
9GHF|1|a|A|1477
9GHF|1|a|G|1478
*
9GHF|1|a|U|1513
9GHF|1|a|G|1514
9GHF|1|a|A|1515
9GHF|1|a|G|1516
9GHF|1|a|G|1517

Current chains

Chain a

23S rRNA

Nearby chains