IL_9GHF_137

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_137 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0582

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GHF|1|a|U|1851
9GHF|1|a|U|1852
9GHF|1|a|A|1853
9GHF|1|a|A|1854
9GHF|1|a|U|1855
9GHF|1|a|U|1856
9GHF|1|a|G|1857
9GHF|1|a|A|1858
9GHF|1|a|U|1859
9GHF|1|a|G|1860
*
9GHF|1|a|U|1882
9GHF|1|a|U|1883
9GHF|1|a|G|1884
9GHF|1|a|A|1885
9GHF|1|a|U|1886
9GHF|1|a|C|1887
9GHF|1|a|G|1888
9GHF|1|a|A|1889
9GHF|1|a|A|1890
9GHF|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains