3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
9GHF|1|a|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHF_166 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.0587
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9GHF|1|a|G|2737
9GHF|1|a|A|2738
9GHF|1|a|U|2739
9GHF|1|a|A|2740
9GHF|1|a|A|2741
9GHF|1|a|G|2742
*
9GHF|1|a|C|2762
9GHF|1|a|G|2763
9GHF|1|a|A|2764
9GHF|1|a|A|2765
9GHF|1|a|A|2766
9GHF|1|a|C|2767

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain g
50S ribosomal protein L6
Chain i
50S ribosomal protein L13

Coloring options:


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