IL_9GHG_023

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_023 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0682

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9GHG|1|A|U|748
9GHG|1|A|G|749
9GHG|1|A|A|750
9GHG|1|A|A|751
9GHG|1|A|G|752
*
9GHG|1|A|U|769
9GHG|1|A|G|770
9GHG|1|A|G|771
9GHG|1|A|A|772
9GHG|1|A|G|773

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2