IL_9GHG_047

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9GHG|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_047 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0758

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9GHG|1|A|C|1246
9GHG|1|A|G|1247
9GHG|1|A|U|1248
9GHG|1|A|U|1249
9GHG|1|A|G|1250
9GHG|1|A|A|1251
9GHG|1|A|A|1252
9GHG|1|A|G|1253
*
9GHG|1|A|U|1272
9GHG|1|A|G|1273
9GHG|1|A|G|1274
9GHG|1|A|A|1275
9GHG|1|A|G|1276

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20