IL_9GHG_056

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

9GHG|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_056 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2761

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9GHG|1|A|C|1461
9GHG|1|A|G|1462
9GHG|1|A|A|1463
9GHG|1|A|U|1464
9GHG|1|A|G|1465
*
9GHG|1|A|C|1624
9GHG|1|A|U|1625
9GHG|1|A|A|1626
9GHG|1|A|G|1627

Current chains

Chain A

23S rRNA

Nearby chains