IL_9GHG_058

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

9GHG|1|A|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_058 not in the Motif Atlas

Homologous match to IL_9DFE_056

Geometric discrepancy: 0.1598

The information below is about IL_9DFE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9GHG|1|A|A|1481
9GHG|1|A|U|1482
9GHG|1|A|A|1483
9GHG|1|A|G|1484
*
9GHG|1|A|U|1598
9GHG|1|A|G|1599
9GHG|1|A|A|1600
9GHG|1|A|U|1601
9GHG|1|A|U|1602

Current chains

Chain A

23S rRNA

Nearby chains