IL_9GHG_083

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9GHG|1|A|A|2466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_083 not in the Motif Atlas

Homologous match to IL_9DFE_081

Geometric discrepancy: 0.0798

The information below is about IL_9DFE_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9GHG|1|A|G|2097
9GHG|1|A|A|2098
*
9GHG|1|A|U|2465
9GHG|1|A|A|2466
9GHG|1|A|C|2467
9GHG|1|A|C|2468

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Transfer RNA; tRNA

Chain G

50S ribosomal protein L2