IL_9GHG_167

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_167 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.114

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9GHG|1|a|C|1313
9GHG|1|a|G|1314
9GHG|1|a|G|1315
9GHG|1|a|A|1316
9GHG|1|a|U|1317
9GHG|1|a|U|1318
*
9GHG|1|a|A|1339
9GHG|1|a|U|1340
9GHG|1|a|G|1341
9GHG|1|a|A|1342
9GHG|1|a|A|1343
9GHG|1|a|G|1344

Current chains

Chain a

23S rRNA

Nearby chains

Chain n

30S ribosomal protein S13