IL_9GHH_009

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_009 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0699

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9GHH|1|A|C|241
9GHH|1|A|U|242
9GHH|1|A|U|243
9GHH|1|A|A|244
9GHH|1|A|G|245
9GHH|1|A|U|246
9GHH|1|A|A|247
9GHH|1|A|G|248
*
9GHH|1|A|C|256
9GHH|1|A|G|257
9GHH|1|A|A|258
9GHH|1|A|A|259
9GHH|1|A|A|260
9GHH|1|A|C|261
9GHH|1|A|G|262

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15