3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UC*GAA
Length
5 nucleotides
Bulged bases
9GHH|1|A|A|809
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHH_021 not in the Motif Atlas
Homologous match to IL_4WF9_022
Geometric discrepancy: 0.0851
The information below is about IL_4WF9_022
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

9GHH|1|A|U|742
9GHH|1|A|C|743
*
9GHH|1|A|G|808
9GHH|1|A|A|809
9GHH|1|A|A|810

Current chains

Chain A
23S rRNA

Nearby chains

Chain G
50S ribosomal protein L2

Coloring options:


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