IL_9GHH_028

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

9GHH|1|A|U|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_028 not in the Motif Atlas

Homologous match to IL_4WF9_030

Geometric discrepancy: 0.5486

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9GHH|1|A|A|897
9GHH|1|A|U|898
*
9GHH|1|A|A|969
9GHH|1|A|U|970
9GHH|1|A|U|971

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain Z

50S ribosomal protein L27