IL_9GHH_068

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9GHH|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_068 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0886

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|C|1730
9GHH|1|A|G|1731
9GHH|1|A|U|1732
9GHH|1|A|A|1733
9GHH|1|A|A|1734
9GHH|1|A|C|1735
*
9GHH|1|A|G|1740
9GHH|1|A|G|1741
9GHH|1|A|A|1742
9GHH|1|A|G|1743
9GHH|1|A|A|1744
9GHH|1|A|A|1745
9GHH|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA