3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AGGAG*CGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHH_076 not in the Motif Atlas
Homologous match to IL_9DFE_075
Geometric discrepancy: 0.0946
The information below is about IL_9DFE_075
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

9GHH|1|A|A|1883
9GHH|1|A|G|1884
9GHH|1|A|G|1885
9GHH|1|A|A|1886
9GHH|1|A|G|1887
*
9GHH|1|A|C|1909
9GHH|1|A|G|1910
9GHH|1|A|A|1911
9GHH|1|A|A|1912
9GHH|1|A|U|1913

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
Transfer RNA; tRNA

Coloring options:


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