IL_9GHH_088

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_088 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.1025

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9GHH|1|A|C|2377
9GHH|1|A|G|2378
9GHH|1|A|A|2379
9GHH|1|A|G|2380
*
9GHH|1|A|C|2391
9GHH|1|A|G|2392
9GHH|1|A|A|2393
9GHH|1|A|G|2394

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain Z

50S ribosomal protein L27