IL_9GHH_092

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_092 not in the Motif Atlas

Homologous match to IL_9DFE_093

Geometric discrepancy: 0.1088

The information below is about IL_9DFE_093

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

9GHH|1|A|U|2484
9GHH|1|A|U|2485
9GHH|1|A|A|2486
*
9GHH|1|A|U|2520
9GHH|1|A|G|2521

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Far1

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27