IL_9GHH_096

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9GHH|1|A|G|2603, 9GHH|1|A|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_096 not in the Motif Atlas

Homologous match to IL_9DFE_097

Geometric discrepancy: 0.0728

The information below is about IL_9DFE_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9GHH|1|A|C|2537
9GHH|1|A|U|2538
9GHH|1|A|C|2539
*
9GHH|1|A|G|2601
9GHH|1|A|C|2602
9GHH|1|A|G|2603
9GHH|1|A|A|2604
9GHH|1|A|G|2605

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL32

Chain H

50S ribosomal protein L3