IL_9GHH_131

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_131 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2847

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9GHH|1|a|U|417
9GHH|1|a|G|418
9GHH|1|a|A|419
9GHH|1|a|U|420
9GHH|1|a|G|421
9GHH|1|a|A|422
9GHH|1|a|A|423
9GHH|1|a|G|424
*
9GHH|1|a|C|435
9GHH|1|a|G|436
9GHH|1|a|U|437
9GHH|1|a|A|438
9GHH|1|a|A|439
9GHH|1|a|A|440
9GHH|1|a|A|441

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4