3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHH_160 not in the Motif Atlas
Homologous match to IL_5J7L_050
Geometric discrepancy: 0.0842
The information below is about IL_5J7L_050
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

9GHH|1|a|G|1072
9GHH|1|a|U|1073
9GHH|1|a|C|1074
*
9GHH|1|a|G|1203
9GHH|1|a|U|1204
9GHH|1|a|C|1205

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S3
Chain f
30S ribosomal protein S5
Chain k
Small ribosomal subunit protein uS10
Chain o
30S ribosomal protein S14 type Z

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1499 s