IL_9GHH_171

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

9GHH|1|a|A|1503, 9GHH|1|a|A|1504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_171 not in the Motif Atlas

Geometric match to IL_8UO6_002

Geometric discrepancy: 0.2842

The information below is about IL_8UO6_002

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9GHH|1|a|C|1417
9GHH|1|a|A|1418
9GHH|1|a|C|1419
*
9GHH|1|a|G|1502
9GHH|1|a|A|1503
9GHH|1|a|A|1504
9GHH|1|a|G|1505

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain b

mRNA

Chain m

30S ribosomal protein S12