IL_9GHH_177

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGA*UAG

Length

7 nucleotides

Bulged bases

9GHH|1|a|G|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_177 not in the Motif Atlas

Geometric match to IL_5J7L_325

Geometric discrepancy: 0.1411

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9GHH|1|a|U|1450
9GHH|1|a|G|1451
9GHH|1|a|G|1452
9GHH|1|a|A|1453
*
9GHH|1|a|U|1470
9GHH|1|a|A|1471
9GHH|1|a|G|1472

Current chains

Chain a

16S rRNA

Nearby chains

Chain S

50S ribosomal protein L19

Chain u

30S ribosomal protein S20