IL_9GJ5_005

3D structure

PDB id

9GJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in distal position and Ebp1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.61 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9GJ5|1|1|U|467, 9GJ5|1|1|U|687

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GJ5|1|1|A|466
9GJ5|1|1|U|467
9GJ5|1|1|U|468
9GJ5|1|1|C|469
9GJ5|1|1|A|470
9GJ5|1|1|A|471
9GJ5|1|1|C|472
*
9GJ5|1|1|G|682
9GJ5|1|1|C|683
9GJ5|1|1|G|684
9GJ5|1|1|C|685
9GJ5|1|1|A|686
9GJ5|1|1|U|687
9GJ5|1|1|U|688
9GJ5|1|1|U|689

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

N-alpha-acetyltransferase 15, NatA auxiliary subunit

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28