IL_9GJ5_010

3D structure

PDB id

9GJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in distal position and Ebp1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.61 Å

Loop

Sequence

GGCCCGG*UCC

Length

10 nucleotides

Bulged bases

9GJ5|1|1|C|501, 9GJ5|1|1|C|502, 9GJ5|1|1|C|503, 9GJ5|1|1|G|504

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GJ5_010 not in the Motif Atlas

Geometric match to IL_8GLP_236

Geometric discrepancy: 0.3614

The information below is about IL_8GLP_236

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9GJ5|1|1|G|499
9GJ5|1|1|G|500
9GJ5|1|1|C|501
9GJ5|1|1|C|502
9GJ5|1|1|C|503
9GJ5|1|1|G|504
9GJ5|1|1|G|505
*
9GJ5|1|1|U|653
9GJ5|1|1|C|654
9GJ5|1|1|C|655

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4