IL_9GJ6_002

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9GJ6|1|1|G|409, 9GJ6|1|1|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GJ6|1|1|G|387
9GJ6|1|1|A|388
9GJ6|1|1|A|389
9GJ6|1|1|C|390
*
9GJ6|1|1|G|401
9GJ6|1|1|A|402
9GJ6|1|1|G|403
9GJ6|1|1|U|404
9GJ6|1|1|U|405
9GJ6|1|1|C|406
9GJ6|1|1|A|407
9GJ6|1|1|A|408
9GJ6|1|1|G|409
9GJ6|1|1|A|410
9GJ6|1|1|G|411
9GJ6|1|1|G|412
9GJ6|1|1|G|413
9GJ6|1|1|C|414

Current chains

Chain 1

28S rRNA

Nearby chains

Chain A

N-alpha-acetyltransferase 10

Chain B

N-alpha-acetyltransferase 15, NatA auxiliary subunit

Chain LP

60S ribosomal protein L17

Chain LY

Large ribosomal subunit protein uL24