IL_9GJ6_006

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9GJ6|1|1|G|483, 9GJ6|1|1|U|484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GJ6_006 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.159

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.2

Basepair signature

cWW-cWW

Number of instances in this motif group

15

Unit IDs

9GJ6|1|1|G|482
9GJ6|1|1|G|483
9GJ6|1|1|U|484
9GJ6|1|1|C|485
*
9GJ6|1|1|G|671
9GJ6|1|1|C|672

Current chains

Chain 1

28S rRNA

Nearby chains