IL_9GJ6_008

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GUGU*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GJ6_008 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3089

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9GJ6|1|1|G|491
9GJ6|1|1|U|492
9GJ6|1|1|G|493
9GJ6|1|1|U|494
*
9GJ6|1|1|G|659
9GJ6|1|1|A|660
9GJ6|1|1|C|661
9GJ6|1|1|C|662

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4