IL_9GJ6_012

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

9GJ6|1|1|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GJ6_012 not in the Motif Atlas

Homologous match to IL_8GLP_032

Geometric discrepancy: 0.1396

The information below is about IL_8GLP_032

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9GJ6|1|1|G|508
9GJ6|1|1|A|509
9GJ6|1|1|U|510
*
9GJ6|1|1|A|649
9GJ6|1|1|C|650

Current chains

Chain 1

28S rRNA

Nearby chains