IL_9GJ6_017

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GJ6_017 not in the Motif Atlas

Homologous match to IL_8GLP_169

Geometric discrepancy: 0.2398

The information below is about IL_8GLP_169

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9GJ6|1|1|G|4769
9GJ6|1|1|U|4770
9GJ6|1|1|C|4771
*
9GJ6|1|1|G|4863
9GJ6|1|1|U|4864
9GJ6|1|1|C|4865

Current chains

Chain 1

28S rRNA

Nearby chains