IL_9GMO_020

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9GMO|1|A|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_020 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.338

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9GMO|1|A|C|459
9GMO|1|A|C|460
*
9GMO|1|A|G|695
9GMO|1|A|C|696
9GMO|1|A|G|697

Current chains

Chain A

28S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein eL6

Chain k

60S ribosomal protein L28