IL_9GMO_043

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9GMO|1|A|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_043 not in the Motif Atlas

Geometric match to IL_8C3A_400

Geometric discrepancy: 0.1849

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9GMO|1|A|G|1360
9GMO|1|A|G|1361
*
9GMO|1|A|C|1376
9GMO|1|A|G|1377
9GMO|1|A|C|1378
9GMO|1|A|C|1379

Current chains

Chain A

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain l

60S ribosomal protein L15

Chain r

60S ribosomal protein L13