IL_9GMO_074

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

9GMO|1|A|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_074 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.3518

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9GMO|1|A|C|2083
9GMO|1|A|C|2084
9GMO|1|A|G|2085
*
9GMO|1|A|C|2272
9GMO|1|A|G|2273

Current chains

Chain A

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain K

60S ribosomal protein L18

Chain Y

60S ribosomal protein L32

Chain m

Large ribosomal subunit protein uL30