IL_9GMO_080
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_080 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.1463
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 33
Unit IDs
9GMO|1|A|G|2406
9GMO|1|A|G|2407
9GMO|1|A|U|2408
9GMO|1|A|U|2409
*
9GMO|1|A|A|2783
9GMO|1|A|C|2784
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L23a
- Chain a
- 60S ribosomal protein L34
- Chain d
- 60S ribosomal protein L37
- Chain f
- 60S ribosomal protein L39
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