IL_9GMO_091

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

9GMO|1|A|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_091 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.1028

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9GMO|1|A|C|2704
9GMO|1|A|G|2705
*
9GMO|1|A|C|2710
9GMO|1|A|G|2711
9GMO|1|A|G|2712

Current chains

Chain A

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L19

Chain O

60S ribosomal protein L22

Chain R

60S ribosomal protein L23a