3D structure

PDB id
9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method
ELECTRON MICROSCOPY
Resolution
2.59 Å

Loop

Sequence
GGAAGUCGG*CUGU(OMC)
Length
14 nucleotides
Bulged bases
9GMO|1|A|G|3839
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GMO_095 not in the Motif Atlas
Geometric match to IL_8C3A_484
Geometric discrepancy: 0.1041
The information below is about IL_8C3A_484
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.2
Basepair signature
cWW-cWW-L-cWW-L-R-L-R-L-L
Number of instances in this motif group
3

Unit IDs

9GMO|1|A|G|2847
9GMO|1|A|G|2848
9GMO|1|A|A|2849
9GMO|1|A|A|2850
9GMO|1|A|G|2851
9GMO|1|A|U|2852
9GMO|1|A|C|2853
9GMO|1|A|G|2854
9GMO|1|A|G|2855
*
9GMO|1|A|C|3837
9GMO|1|A|U|3838
9GMO|1|A|G|3839
9GMO|1|A|U|3840
9GMO|1|A|OMC|3841

Current chains

Chain A
28S rRNA

Nearby chains

Chain E
60S ribosomal protein L3
Chain P
60S ribosomal protein L23

Coloring options:


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