IL_9GMO_109

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9GMO|1|A|A|3901, 9GMO|1|A|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_109 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1226

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9GMO|1|A|G|3900
9GMO|1|A|A|3901
9GMO|1|A|A|3902
*
9GMO|1|A|U|4558
9GMO|1|A|A|4559
9GMO|1|A|C|4560
9GMO|1|A|C|4561

Current chains

Chain A

28S rRNA

Nearby chains

Chain 0

Cytoplasmic 60S subunit biogenesis factor ZNF622

Chain E

60S ribosomal protein L3

Chain J

60S ribosomal protein L17