IL_9GMO_110

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

9GMO|1|A|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_110 not in the Motif Atlas

Homologous match to IL_8P9A_321

Geometric discrepancy: 0.0944

The information below is about IL_8P9A_321

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

9GMO|1|A|G|3913
9GMO|1|A|U|3914
9GMO|1|A|U|3915
*
9GMO|1|A|A|4388
9GMO|1|A|C|4389

Current chains

Chain A

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain U

60S ribosomal protein L27a