IL_9GMO_121

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_121 not in the Motif Atlas

Homologous match to IL_8P9A_333

Geometric discrepancy: 0.1224

The information below is about IL_8P9A_333

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9GMO|1|A|C|4412
9GMO|1|A|C|4413
9GMO|1|A|A|4414
9GMO|1|A|A|4415
9GMO|1|A|G|4416
*
9GMO|1|A|C|4426
9GMO|1|A|G|4427
9GMO|1|A|A|4428
9GMO|1|A|C|4429
9GMO|1|A|G|4430

Current chains

Chain A

28S rRNA

Nearby chains

Chain g

Ubiquitin-60S ribosomal protein L40

Chain p

Large ribosomal subunit protein uL16