IL_9GMO_129

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9GMO|1|A|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_129 not in the Motif Atlas

Homologous match to IL_8C3A_122

Geometric discrepancy: 0.1349

The information below is about IL_8C3A_122

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9GMO|1|A|C|4537
9GMO|1|A|G|4538
*
9GMO|1|A|C|4547
9GMO|1|A|A|4548
9GMO|1|A|G|4549

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8