IL_9GMO_132

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

(A2M)UC*(OMG)U(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_132 not in the Motif Atlas

Homologous match to IL_8P9A_343

Geometric discrepancy: 0.1386

The information below is about IL_8P9A_343

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9GMO|1|A|A2M|4590
9GMO|1|A|U|4591
9GMO|1|A|C|4592
*
9GMO|1|A|OMG|4618
9GMO|1|A|U|4619
9GMO|1|A|OMU|4620

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain P

60S ribosomal protein L23