IL_9GMO_139

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGCG*CUG

Length

7 nucleotides

Bulged bases

9GMO|1|A|C|4741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_139 not in the Motif Atlas

Homologous match to IL_8C3A_130

Geometric discrepancy: 0.4863

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9GMO|1|A|C|4739
9GMO|1|A|G|4740
9GMO|1|A|C|4741
9GMO|1|A|G|4742
*
9GMO|1|A|C|4958
9GMO|1|A|U|4959
9GMO|1|A|G|4960

Current chains

Chain A

28S rRNA

Nearby chains