IL_9GMO_142

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

9GMO|1|A|C|4757, 9GMO|1|A|U|4758, 9GMO|1|A|A|4764, 9GMO|1|A|G|4870, 9GMO|1|A|C|4871, 9GMO|1|A|G|4873, 9GMO|1|A|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GMO|1|A|C|4756
9GMO|1|A|C|4757
9GMO|1|A|U|4758
9GMO|1|A|C|4759
9GMO|1|A|G|4760
9GMO|1|A|G|4761
9GMO|1|A|A|4762
9GMO|1|A|U|4763
9GMO|1|A|A|4764
9GMO|1|A|G|4765
*
9GMO|1|A|U|4869
9GMO|1|A|G|4870
9GMO|1|A|C|4871
9GMO|1|A|G|4872
9GMO|1|A|G|4873
9GMO|1|A|A|4874
9GMO|1|A|G|4875
9GMO|1|A|U|4876
9GMO|1|A|G|4877

Current chains

Chain A

28S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein eL6

Chain I

60S ribosomal protein L13a

Chain M

60S ribosomal protein L18a

Chain o

60S ribosomal protein L9

Chain s

60S ribosomal protein L14