IL_9GR1_025

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9GR1|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_025 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.073

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9GR1|1|A|C|569
9GR1|1|A|G|570
9GR1|1|A|U|571
9GR1|1|A|A|572
9GR1|1|A|A|573
9GR1|1|A|A|574
9GR1|1|A|G|575
*
9GR1|1|A|C|880
9GR1|1|A|G|881

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17