IL_9GR1_055

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_055 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0689

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9GR1|1|A|C|1303
9GR1|1|A|G|1304
9GR1|1|A|G|1305
9GR1|1|A|A|1306
9GR1|1|A|U|1307
9GR1|1|A|U|1308
*
9GR1|1|A|A|1329
9GR1|1|A|U|1330
9GR1|1|A|G|1331
9GR1|1|A|A|1332
9GR1|1|A|A|1333
9GR1|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13