IL_9GR1_085

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9GR1|1|a|G|778, 9GR1|1|a|A|790, 9GR1|1|a|A|791, 9GR1|1|a|U|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_085 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0715

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9GR1|1|a|G|777
9GR1|1|a|G|778
9GR1|1|a|G|779
*
9GR1|1|a|C|789
9GR1|1|a|A|790
9GR1|1|a|A|791
9GR1|1|a|U|792
9GR1|1|a|C|793

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain r

50S ribosomal protein L22